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RNA was extracted from blood samples according to the manufacturer

s

instructions using the PAXgene blood RNA kit (Qiagen). A NanoDrop

1000 spectrophotometer (Thermo Scienti

fi

c, Waltham, MA, USA) was

used for quanti

fi

cation and purity assessment of RNA samples. cDNAwas

synthesized from 1

m

g of RNA using qScript XLT SuperMix (Quanta

Biosciences, Beverly, MA, USA) according to the manufacturer

s

instructions.

2.3.

ddPCR analysis

AR-V7 and AR-FL mRNA levels were simultaneously quanti

fi

ed in a dual

color assay using custom primer and hydrolysis probe sets on a QX200

ddPCR systemwith automatic droplet generation (Bio-Rad Laboratories,

Hercules, CA, USA). Analyses were performed and reported according to

the digital MIQE guidelines

[22]

. Further information on the ddPCR

assays is provided in the Supplementary material. All operators involved

in the measurements were blinded to the assignment of samples to

healthy control subjects or patients and their outcome.

2.4.

Healthy donors

We included 28 healthy male subjects (age

<

40 yr) to determine

background levels of AR-V7 and AR-FL transcripts in peripheral whole

blood. Samples from healthy subjects were obtained and stored under

the same conditions as for patient samples to minimize any bias.

2.5.

Statistical analysis

The Supplementary material contains details on the statistical analysis.

3.

Results

3.1.

Patient characteristics

We enrolled 85 mCRPC patients who were scheduled to

undergo a new line of therapy with either abiraterone

(

n

= 56) or enzalutamide (

n

= 29).

Table 1

provides detailed

information on baseline characteristics and clinical out-

comes. Bone and visceral metastases were present in 96%

and 28% of patients, respectively. Prior systemic treatment

regimens for mCRPC included chemotherapy with doce-

taxel in 79% of patients and abiraterone in 28% of patients.

None had previously received enzalutamide.

3.2.

AR-V7 detection in peripheral whole blood

First we assessed the analytical validity of our ddPCR assay

for AR-V7 and AR-FL isoform detection. AR-V7 mRNA from

one VCaP cell against a background of 1 million leukocytes

could be repeatedly detected (Supplementary Fig. 1). Next

we quantified AR-V7 and AR-FL transcript levels in

peripheral whole blood samples from 85 mCRPC patients

and 28 healthy men as control subjects

( Fig. 1 A

). Notably,

18 of 28 healthy control subjects had detectable (non-zero)

AR-V7 levels. To normalize AR-V7 expression, we calculated

the fraction of AR-V7 transcripts over total AR (AR-V7 plus

AR-FL) transcripts, and used this ratio in all subsequent

analyses. The fraction of AR-V7 transcripts inwhole blood of

mCRPC patients ranged from0% to 4.0% (mean 0.3%;

Fig. 1 B

).

Using the maximum AR-V7 fraction observed among

healthy men (0.6%) as a cutoff, we dichotomized patients

into

AR-V7 high

and

AR-V7 low

groups

( Fig. 1 B

). Overall,

15/85 patients (18%) had high AR-V7 levels. According to

prior therapy with zero, one, two, and three lines of

systemic treatment, the number of patients with high AR-

V7 levels was 0/9 (0%), 9/39 (23%), 3/27 (11%), and

3/10 (30%), respectively.

3.3.

AR-V7 status in whole blood predicts PSA response under

abiraterone or enzalutamide

The overall proportion of patients with a PSA response

defined as a PSA decline of 50% was 41% (31 of 74 menwith

available PSA follow-up). The PSA response rate was 0% in

patients with high AR-V7 levels (0 of 12 men), and 50% in

patients with low AR-V7 levels (31 of 62 men,

Fig. 2

). Thus,

AR-V7 status was significantly associated with PSA response

in univariable analysis (

p

<

0.001). In a multivariable

logistic regression analysis we modeled the influence on

PSA response of AR-V7 status together with clinical

variables

( Table 2 )

. Only the association between AR-V7

status and PSA response remained significant, and high

AR-V7 levels in whole blood were confirmed as an

independent predictor of no PSA response to treatment

with abiraterone or enzalutamide (

p

= 0.03). Furthermore,

AR-V7 was confirmed as an independent predictor of no PSA

response in a multivariable model with AR-V7 expression as

a continuous variable (

p

= 0.04; Supplementary Table 1).

Table 1

Patient characteristics and clinical outcomes

Parameter

Value

Patients (

n

)

85

Median age, yr (IQR) [

n

= 85]

71 (66

74)

Median PSA, ng/ml (IQR) [

n

= 84]

211 (29

768)

Eastern Cooperative Oncology Group performance score,

n

(%) [

n

= 83]

0

43 (52)

1

29 (35)

2

11 (13)

Prior systemic treatments for mCRPC,

n

(%) [n = 85]

Docetaxel

67 (79)

Abiraterone

24 (28)

Cabazitaxel

14 (17)

Enzalutamide

0 (0)

Radium-223

6 (7)

Other

12 (14)

Prior lines of systemic treatment regimens for mCRPC (

n

) [

n

= 85]

0

9

1

39

2

27

3

10

Site of metastasis,

n

(%) [

n

= 83]

Bone

80 (96)

Visceral

23 (28)

Deceased, n (%) [

n

= 84]

51 (60)

Median follow-up, mo (IQR) [

n

= 84]

7.6 (4.7

12.7)

With event (death)

7.3 (3.3

12.7)

Without event (death)

7.7 (5.4

12.6)

Median PSA-PFS, mo (95% CI) [

n

= 74]

3.6 (3.2

4.1)

Median clinical PFS, mo (95% CI) [

n

= 82]

4.6 (3.1

6.2)

Median overall survival, mo (95% CI) [n = 84]

10.1 (5.8

14.5)

IQR = interquartile range; CI = con

fi

dence interval; mCRPC = metastatic

castration-resistant prostate cancer; PSA = prostate-speci

fi

c antigen;

PFS = progression-free survival.

E U R O P E A N U R O L O GY 7 2 ( 2 0 17 ) 8 2 8

8 3 4

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